<?
/**
 * Change Log:
 * 	Jul 14, 2023	Harman Singh	Migrated from PHP 5.3 to PHP 8.1
 */
#Transition: 			PHP 4.3 to PHP 5.16 to target PHP 5.3
#Testing environment: 	PHP 5.1.6
#Methods changed: 		modified getAll function - added $limit and $offset parameters
#Methods Tested: 		getAll & getById(104032)
#Testing Performed: 	Using pm3/test/manager_test_scripts/PcrManager_test.php
#DAO called: PcrDao
#DB directly called:  	NO
#Transition closed

class PcrManager {
	function __construct() {}

	/*************Modified By Lily*****************************/
	//function getAll() {
        /**
        * added the parameters $limit and $offset on Dec 20, 2010
        */
	function getAll($limit=false,$offset=false){
		$pcrDao= new PcrDao();
		//$result=$pcrDao->searchAll($limit,$offset);
		$result=$pcrDao->searchAll($limit,$offset);
		while ($row=pg_fetch_assoc($result)) {
			$pcr=new Pcr($row["id"]);
			$pcr->setSeqentry($row["fk_seqentry"]);
			$pcr->setPrimer_f($row["fk_primer_f"]);
			$pcr->setPrimer_r($row["fk_primer_r"]);
			$pcr->setNotes($row["note"]);
			$pcr->setUpdated($row["last_updated"]);
                        $pcr->setMarker( $row["fk_marker"]);
			$pcrlist[]=$pcr;
		}
		return $pcrlist;
	}
	/***********************************************/

	function getById($id) {
		$pcrDao= new PcrDao();
		$result=$pcrDao->searchByPcrid($id);
		while ($row=pg_fetch_assoc($result)) {
			$pcr=new Pcr($row["id"]);
			$pcr->setSeqentry($row["fk_seqentry"]);
			$pcr->setPrimer_f($row["fk_primer_f"]);
			$pcr->setPrimer_r($row["fk_primer_r"]);
			$pcr->setNotes($row["note"]);
			$pcr->setUpdated($row["last_updated"]);
                        $pcr->setMarker( $row["fk_marker"]);
		}
		return $pcr;
	}


	function getBySeqentry($seqid) {
		$pcrlist = NULL;
		$pcrDao= new PcrDao();
		$result=$pcrDao->searchBySeqentry($seqid);
		while ($row=pg_fetch_assoc($result)) {
			$pcr=new Pcr($row["id"]);
			$pcr->setSeqentry($row["fk_seqentry"]);
			$pcr->setPrimer_f($row["fk_primer_f"]);
			$pcr->setPrimer_r($row["fk_primer_r"]);
			$pcr->setNotes($row["note"]);
			$pcr->setUpdated($row["last_updated"]);
                        $pcr->setMarker( $row["fk_marker"]);
			$pcrlist[]=$pcr;
		}
		return $pcrlist;
	}

	function getBySeqentryMarker($seqid,$marker) {
		$pcrDao= new PcrDao();
		$result=$pcrDao->searchBySeqentryMarker($seqid,$marker);
		while ($row=pg_fetch_assoc($result)) {
			$pcr=new Pcr($row["id"]);
			$pcr->setSeqentry($row["fk_seqentry"]);
			$pcr->setPrimer_f($row["fk_primer_f"]);
			$pcr->setPrimer_r($row["fk_primer_r"]);
			$pcr->setNotes($row["note"]);
			$pcr->setUpdated($row["last_updated"]);
                        $pcr->setMarker( $row["fk_marker"]);
			$pcrlist[]=$pcr;
		}
		return $pcrlist;
	}

	function addPcr($pcr,$seqentryid) {
		$pcrDao= new PcrDao();
		if ($seqentryid) {
			if ( is_object($primer=$pcr->getPrimer_f()) ) $primer_f=$primer->getId();
			if ( is_object($primer=$pcr->getPrimer_r()) ) $primer_r=$primer->getId();

            $marker = $pcr->getMarker();
            if ( is_object($marker) )
                $markerID = $marker->getId();

			$result=$pcrDao->insertPcr($seqentryid,$primer_f,$primer_r, $markerID );

		} else $result=false;
		return $result;
	}

	function updatePcr($pcr) {
		$pcrDao= new PcrDao();
		if ($pcr->getSeqentry()) {
			if ( is_object($primer=$pcr->getPrimer_f()) ) $primer_f=$primer->getId();
			if ( is_object($primer=$pcr->getPrimer_r()) ) $primer_r=$primer->getId();

            $marker = $pcr->getMarker();
            if ( is_object($marker) )
                $markerID = $marker->getId();

			$result=$pcrDao->updatePcr($pcr->getId(),$pcr->getSeqentry(),$primer_f,$primer_r,$markerID);

		} else $result=false;
		return $result;
	}

	function deleteById($id){
		$pcrDao= new PcrDao();
		$result=$pcrDao->deleteById($id);
		return $result;
	}

}
?>